- Scientific Name
- Populus euphratica
- Common Names
- Euphrates poplar; Populus diversifolia
- Bioproject
- PRJCA001471
- Biosample
- SAMC070720
- Accession No.
- GWHAAYU00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- college of life sciences Sichuan University, Sichuan University
- Contact
- zhi zhang, zhangzhiyangcs@163.com
- Sequence author(s)
- zhi zhang
- Released Date
- 2019-06-18
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- FALCON 2017-12
- Sequencing & coverage
- PacBio 70.0
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Zhiyang Zhang, et al. Improved genome assembly provides new insights into genome evolution in a desert poplar (Populus euphratica). Molecular Ecology Resources. 2020, 20(3).
Statistics of Genome Assembly
| Genome size (bp) | 604,019,027 |
| GC content | 32.38% |
| Chromosomes sequence No. | 19 |
| Genome sequence No. | 752 |
| Maximum genome sequence length (bp) | 66,662,968 |
| Minimum genome sequence length (bp) | 612 |
| Average genome sequence length (bp) | 803,217 |
| Genome sequence N50 (bp) | 28,590,778 |
| Genome sequence N90 (bp) | 20,262,464 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 36,947 | 36,947 |
| Others | 1,529 | 1,529 |
| Total | 38,476 | 38,476 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 4,506 | 4,506 |
| chr10 | 2,630 | 2,630 |
| chr11 | 1,492 | 1,492 |
| chr12 | 1,373 | 1,373 |
| chr13 | 1,533 | 1,533 |
| chr14 | 1,300 | 1,300 |
| chr15 | 1,443 | 1,443 |
| chr16 | 1,387 | 1,387 |
| chr17 | 1,376 | 1,376 |
| chr18 | 1,415 | 1,415 |
| chr19 | 1,247 | 1,247 |
| chr2 | 2,538 | 2,538 |
| chr3 | 2,078 | 2,078 |
| chr4 | 2,298 | 2,298 |
| chr5 | 2,388 | 2,388 |
| chr6 | 2,693 | 2,693 |
| chr7 | 1,395 | 1,395 |
| chr8 | 2,209 | 2,209 |
| chr9 | 1,646 | 1,646 |
| Others | 1,529 | 1,529 |
| Total | 38,476 | 38,476 |