- Scientific Name
- Populus euphratica
- Common Names
- Euphrates poplar; Populus diversifolia
- Bioproject
- PRJCA001471
- Biosample
- SAMC070720
- Accession No.
- GWHAAYU00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- college of life sciences Sichuan University, Sichuan University
- Contact
- Zhi Zhang, zhangzhiyangcs@163.com
- Sequence author(s)
- Zhi Zhang
- Released Date
- 2019-12-02
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- FALCON 2017-12
- Sequencing & coverage
- PacBio 70.0
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Zhiyang Zhang, et al. Improved genome assembly provides new insights into genome evolution in a desert poplar (Populus euphratica). Molecular Ecology Resources. 2020, 20(3).
Statistics of Genome Assembly
| Genome size (bp) | 574,348,232 |
| GC content | 32.38% |
| Chromosomes sequence No. | 19 |
| Genome sequence No. | 507 |
| Maximum genome sequence length (bp) | 63,758,542 |
| Minimum genome sequence length (bp) | 612 |
| Average genome sequence length (bp) | 1,132,837 |
| Genome sequence N50 (bp) | 28,590,778 |
| Genome sequence N90 (bp) | 19,863,256 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 35,930 | 35,930 |
| Others | 676 | 676 |
| Total | 36,606 | 36,606 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 4,333 | 4,333 |
| chr10 | 2,572 | 2,572 |
| chr11 | 1,410 | 1,410 |
| chr12 | 1,299 | 1,299 |
| chr13 | 1,496 | 1,496 |
| chr14 | 1,283 | 1,283 |
| chr15 | 1,396 | 1,396 |
| chr16 | 1,345 | 1,345 |
| chr17 | 1,335 | 1,335 |
| chr18 | 1,380 | 1,380 |
| chr19 | 1,109 | 1,109 |
| chr2 | 2,495 | 2,495 |
| chr3 | 2,063 | 2,063 |
| chr4 | 2,272 | 2,272 |
| chr5 | 2,328 | 2,328 |
| chr6 | 2,601 | 2,601 |
| chr7 | 1,358 | 1,358 |
| chr8 | 2,209 | 2,209 |
| chr9 | 1,646 | 1,646 |
| Others | 676 | 676 |
| Total | 36,606 | 36,606 |