- Scientific Name
- Setaria italica
- Common Names
- foxtail millet; Chaetochloa italica, Panicum italicum, Pennisetum macrochaetum, Setaria viridis subsp. italica
- Bioproject
- PRJCA001730
- Biosample
- SAMC105994
- Accession No.
- GWHAAZD00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- 25,727,368 (SNP), 4,277,814 (Indel)
- Submitter Organization
- Colloge of Life Science, Shanxi Agricultural University
- Contact
- Xingchun Wang, wxingchun@163.com
- Sequence author(s)
- Xingchun Wang
- Released Date
- 2020-07-01
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Canu May, 2018
Falcon May, 2018
Quickmerge May, 2018 - Sequencing & coverage
- PacBio+HiSeq+Hic 98.1
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Xukai Li, et al. MDSi: Multi-omics Database for Setaria italica. BMC Plant Biology. 2023, 23.
Statistics of Genome Assembly
| Genome size (bp) | 429,939,093 |
| GC content | 45.96% |
| Chromosomes sequence No. | 9 |
| Genome sequence No. | 370 |
| Maximum genome sequence length (bp) | 59,244,420 |
| Minimum genome sequence length (bp) | 207 |
| Average genome sequence length (bp) | 1,161,998 |
| Genome sequence N50 (bp) | 42,406,388 |
| Genome sequence N90 (bp) | 35,173,815 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 41,951 | 41,951 |
| Others | 1,783 | 1,783 |
| Total | 43,734 | 43,734 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 4,773 | 4,773 |
| chr2 | 5,517 | 5,517 |
| chr3 | 4,978 | 4,978 |
| chr4 | 3,329 | 3,329 |
| chr5 | 5,939 | 5,939 |
| chr6 | 3,036 | 3,036 |
| chr7 | 4,222 | 4,222 |
| chr8 | 2,853 | 2,853 |
| chr9 | 7,304 | 7,304 |
| Others | 1,783 | 1,783 |
| Total | 43,734 | 43,734 |