- Scientific Name
- Anas platyrhynchos
- Common Names
- duck, mallard duck, mallard ducks; mallard; Anas boschas, Anas domesticus, Anas platyrhynchos f. domestica
- Bioproject
- PRJCA001785
- Biosample
- SAMC109744
- Accession No.
- GWHAAZF00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- 8,342,394 (SNP), 1,509,678 (Indel)
- Submitter Organization
- Collage of Animal Science and Technology, Yangzhou University
- Contact
- Guobin Chang, gbchang@yzu.edu.cn
- Sequence author(s)
- Guobin Chang
- Released Date
- 2021-09-09
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- SOAPdenovo 1.0
- Sequencing & coverage
- Illumina HiSeq 4000 85.81
- Download
- DNA GFF RNA Protein
- Publication(s)
- Guobin Chang, et al. The First Crested Duck Genome Reveals Clues to Genetic Compensation and CrestCushion Formation. Genomics, Proteomics & Bioinformatics. 2023, 21(3): 483-500.
Statistics of Genome Assembly
| Genome size (bp) | 1,102,391,966 |
| GC content | 41.15% |
| Scaffold sequence No. | 7,534 |
| Maximum scaffold sequence length (bp) | 4,406,617 |
| Minimum scaffold sequence length (bp) | 2,000 |
| Average scaffold sequence length (bp) | 146,322 |
| Scaffold N50 (bp) | 675,958 |
| Scaffold N90 (bp) | 151,176 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 15,278 | 15,278 |