Genome Warehouse

Scientific Name: Anas platyrhynchos
Common Names: duck, mallard duck, mallard ducks; mallard; Anas boschas, Anas domesticus, Anas platyrhynchos f. domestica
Bioproject: PRJCA001785
Biosample: SAMC109744
Accession No.: GWHAAZF00000000
GWH reannotation accession: -
GSA raw reads: -
GVM variations of the species: 8,342,394 (SNP), 1,509,678 (Indel)
Submitter Organization: Collage of Animal Science and Technology, Yangzhou University
Contact: Guobin Chang, gbchang@yzu.edu.cn
Sequence author(s): Guobin Chang
Released Date: 2021-09-09
Assembly Level: Draft genome in scaffold level
Genome Representation: Full Genome
Assembly method: SOAPdenovo 1.0
Sequencing & coverage: Illumina HiSeq 4000 85.81
Download: DNA GFF RNA Protein
Publication(s): Guobin Chang, et al. The First Crested Duck Genome Reveals Clues to Genetic Compensation and CrestCushion Formation. Genomics, Proteomics & Bioinformatics. 2023, 21(3): 483-500.

Assembly Accession	GWH Reannotation Accession	Assembly Name	Assembly Level	Released Date	Download Files
GWHAAZF00000000	-	Chinese spotted-bill duck_v1	Draft genome in scaffold level	2021-09-09	DNA GFF RNA Protein

Genome size (bp)	1,102,391,966
GC content	41.15%
Scaffold sequence No.	7,534
Maximum scaffold sequence length (bp)	4,406,617
Minimum scaffold sequence length (bp)	2,000
Average scaffold sequence length (bp)	146,322
Scaffold N50 (bp)	675,958
Scaffold N90 (bp)	151,176

Annotation of Whole Genome Assembly

	Protein	Total
Total	15,278	15,278