- Scientific Name
- Glycine max
- Common Names
- soybeans; soybean; Phaseolus max
- Bioproject
- PRJCA015269
- Biosample
- SAMC1127443
- Accession No.
- GWHBWDJ00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- CRR705247
- GVM variations of the species
- 40,350,378 (SNP), 12,368,700 (Indel)
- Submitter Organization
- Agricultural College, Guangxi University
- Contact
- Chao Zhang, sdau2014zc@outlook.com
- Sequence author(s)
- Chao Zhang, Haifeng Wang
- Released Date
- 2023-07-29
- Assembly Level
- Complete genome
- Genome Representation
- Full Genome
- Assembly method
- hifiasm 0.18.9-r527
- Sequencing & coverage
- ONT 117.0
HiFi 67.0
BGI DNBSEQ 53.0 - Download
-
DNA
GFF
RNA
Protein
- Publication(s) -
Statistics of Genome Assembly
| Genome size (bp) | 1,007,237,669 |
| GC content | 35.02% |
| Chromosomes sequence No. | 20 |
Annotation of Whole Genome Assembly
| Protein | Others | Total | |
|---|---|---|---|
| Chromosome | 80,824 | 1,529,442 | 1,610,266 |
| Total | 80,824 | 1,529,442 | 1,610,266 |
Annotation Details
| ChrID | Protein | Others | Total |
|---|---|---|---|
| chr1 | 3,576 | 85,615 | 89,191 |
| chr10 | 4,441 | 87,247 | 91,688 |
| chr11 | 4,032 | 64,355 | 68,387 |
| chr12 | 3,505 | 59,317 | 62,822 |
| chr13 | 5,368 | 63,663 | 69,031 |
| chr14 | 3,403 | 79,184 | 82,587 |
| chr15 | 4,058 | 72,716 | 76,774 |
| chr16 | 3,150 | 58,509 | 61,659 |
| chr17 | 3,789 | 68,531 | 72,320 |
| chr18 | 4,130 | 78,753 | 82,883 |
| chr19 | 3,719 | 85,781 | 89,500 |
| chr2 | 4,399 | 98,719 | 103,118 |
| chr20 | 3,832 | 87,267 | 91,099 |
| chr3 | 3,855 | 75,174 | 79,029 |
| chr4 | 3,786 | 89,631 | 93,417 |
| chr5 | 3,681 | 68,909 | 72,590 |
| chr6 | 4,760 | 79,720 | 84,480 |
| chr7 | 4,024 | 71,938 | 75,962 |
| chr8 | 5,286 | 77,652 | 82,938 |
| chr9 | 4,030 | 76,761 | 80,791 |
| Total | 80,824 | 1,529,442 | 1,610,266 |