- Scientific Name
- Cucumis melo
- Common Names
- Oriental melon; muskmelon;
- Bioproject
- PRJCA019119
- Biosample
- SAMC3005582
- Accession No.
- GWHDTVT00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- 40,686,353 (SNP), 8,782,297 (Indel)
- Submitter Organization
- College of Horticulture, Qingdao Agricultural University
- Contact
- Xinxiu Chen, cxxlddx@163.com
- Sequence author(s)
- Xinxiu Chen
- Released Date
- 2024-02-01
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Flye 2.8.1
Hifiasm 0.8 - Sequencing & coverage
- PacBio 42.0
Hi-C 100.0
Illumina-Solexa 30.0 - Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Xinxiu Chen, et al. A wild melon reference genome provides novel insights into the domestication of a key gene responsible for melon fruit acidity. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2024, 137(6): 144.
Statistics of Genome Assembly
| Genome size (bp) | 379,455,020 |
| GC content | 34.70% |
| Chromosomes sequence No. | 12 |
| Genome sequence No. | 47 |
| Maximum genome sequence length (bp) | 36,455,885 |
| Minimum genome sequence length (bp) | 27,594 |
| Average genome sequence length (bp) | 8,073,511 |
| Genome sequence N50 (bp) | 30,742,809 |
| Genome sequence N90 (bp) | 24,749,375 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 24,499 | 24,499 |
| Total | 24,499 | 24,499 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 2,489 | 2,489 |
| chr10 | 1,524 | 1,524 |
| chr11 | 2,229 | 2,229 |
| chr12 | 1,844 | 1,844 |
| chr2 | 1,781 | 1,781 |
| chr3 | 1,935 | 1,935 |
| chr4 | 2,513 | 2,513 |
| chr5 | 1,732 | 1,732 |
| chr6 | 2,456 | 2,456 |
| chr7 | 1,930 | 1,930 |
| chr8 | 2,254 | 2,254 |
| chr9 | 1,812 | 1,812 |
| Total | 24,499 | 24,499 |