- Scientific Name
- Capsicum chacoense
- Common Names
- -
- Bioproject
- PRJCA019635
- Biosample
- SAMC3057444
- Accession No.
- GWHDTZI00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- bioinfomatics lab, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences
- Contact
- lingkui zhang(1570263833@qq.com)
- Sequence author(s)
- lingkui zhang
- Released Date
- 2024-06-01
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Partial Genome ( Nuclear )
- Assembly method
- nextdenovo v2.2-beta.0
- Sequencing & coverage
- ONT 60.0
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Kang Zhang, et al. Transposon proliferation drives genome architecture and regulatory evolution in wild and domesticated peppers. Nature plants. 2025, 11(2): 359-375.0.
Statistics of Genome Assembly
| Genome size (bp) | 3,063,087,882 |
| GC content | 34.97% |
| Genome sequence No. | 43 |
| Maximum genome sequence length (bp) | 290,118,219 |
| Minimum genome sequence length (bp) | 62,879 |
| Average genome sequence length (bp) | 71,234,602 |
| Genome sequence N50 (bp) | 264,007,046 |
| Genome sequence N90 (bp) | 237,830,281 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 37,421 | 37,421 |