- Scientific Name
- Salmonella enterica subsp. enterica serovar Choleraesuis
- Common Names
- Salmonella choleraesuis choleraesuis, Salmonella choleraesuis serovar Choleraesuis, Salmonella enterica serovar Choleraesuis, Salmonella enterica subsp. enterica serovar Choleraesuis var. Choleraesuis
- Bioproject
- PRJCA019682
- Biosample
- SAMC3057938
- Accession No.
- GWHDTZB00000000
- GWH reannotation accession
- GWHRA_DTZB00000000.1
- GSA raw reads
- CRR875251
- GVM variations of the species
- -
- Submitter Organization
- PASTEURIBN COLLRGE, Soochow University
- Contact
- quangui jiang(quincy1997@163.com)
- Sequence author(s)
- quangui jiang
- Released Date
- 2023-09-20
- Assembly Level
- Draft genome in contig level
- Genome Representation
- Full Genome
- Assembly method
- SPAdes V3.13
- Sequencing & coverage
- Illumina NovaSeq 6000 120.0
- Download
- DNA
- Reannotation Download
- Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein
- Publication(s)
- Heng Li, et al. Centralized industrialization of pork in Europe and America contributes to the global spread of Salmonella enterica. Nature Food. 2024, 5(5): 413-422.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHDTZB00000000 | GWHRA_DTZB00000000.1 | Sa4364 | Draft genome in contig level | 2023-09-20 |
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 4,708,492 |
| GC content | 52.27% |
| Contig sequence No. | 65 |
| Maximum contig sequence length (bp) | 1,468,944 |
| Minimum contig sequence length (bp) | 211 |
| Average contig sequence length (bp) | 72,438 |
| Contig N50 (bp) | 513,395 |
| Contig N90 (bp) | 91,753 |
Statistics of Genome Assembly
| Genome size (bp) | 4,708,492 |
| GC content | 52.27% |
| Contig sequence No. | 65 |
| Maximum contig sequence length (bp) | 1,468,944 |
| Minimum contig sequence length (bp) | 211 |
| Average contig sequence length (bp) | 72,438 |
| Contig N50 (bp) | 513,395 |
| Contig N90 (bp) | 91,753 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | ncRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 4,367 | 81 | 37 | 8 | 106 | 86 | 4,685 |