Genome Warehouse

Scientific Name: Brassica rapa
Common Names: field mustard;
Bioproject: PRJCA001831
Biosample: SAMC111306
Accession No.: GWHABAA00000000
GWH reannotation accession: -
GSA raw reads: -
GVM variations of the species: 11,856,138 (SNP), 4,322,343 (Indel)
Submitter Organization: Molecular and genetic Lab, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences
Contact: Xiaowu Wang, wangxiaowu@caas.cn
Sequence author(s): Xiaowu Wang
Released Date: 2021-05-12
Assembly Level: Draft genome in chromosome level
Genome Representation: Full Genome
Assembly method: MaSuRCA 3.2.6
Sequencing & coverage: Illumina HiSeq 2500 46.08
PacBio 27.69
Download: DNA GFF RNA CDS Protein
Publication(s): Xu Cai, et al. Impacts of allopolyploidization and structural variation on intraspecificdiversification in Brassica rapa. Genome Biology. 2021, 22.

Assembly Accession	GWH Reannotation Accession	Assembly Name	Assembly Level	Released Date	Download Files
GWHABAA00000000	-	PCA	Draft genome in chromosome level	2021-05-12	DNA GFF RNA CDS Protein

Genome size (bp)	367,561,588
GC content	37.07%
Genome sequence No.	2,294
Maximum genome sequence length (bp)	45,207,164
Minimum genome sequence length (bp)	1,623
Average genome sequence length (bp)	160,227
Genome sequence N50 (bp)	29,475,535
Genome sequence N90 (bp)	54,122

Annotation of Whole Genome Assembly

	Protein	Total
Total	47,411	47,411