- Scientific Name
- Gammaproteobacteria
- Common Names
- gamma proteobacteria, gamma subdivision, gamma subgroup, Proteobacteria gamma subdivision, Pseudomonadia, Purple bacteria, gamma subdivision
- Bioproject
- PRJCA020246
- Biosample
- SAMC3092621
- Accession No.
- GWHDUDU00000000
- GWH reannotation accession
- GWHRA_DUDU00000000.1
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- School of Environment, Harbin Institute of Technology
- Contact
- Cheng-cheng Dang, a18232908239@163.com
- Sequence author(s)
- Cheng-cheng Dang
- Released Date
- 2024-10-01
- Assembly Level
- Draft genome in contig level
- Genome Representation
- Full Genome
- Assembly method
- MEGAHIT v1.2.9
CONCOCT v1.1
MaxBin2 v2.2.4
MetaBAT2 v1.7 - Sequencing & coverage
- Illumina NovaSeq 10.0
- Download
- DNA Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein
- Publication(s)
- -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHDUDU00000000 | GWHRA_DUDU00000000.1 | Bin.B014 | Draft genome in contig level | 2024-10-01 |
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 4,594,633 |
| GC content | 67.33% |
| Contig sequence No. | 140 |
| Maximum contig sequence length (bp) | 162,886 |
| Minimum contig sequence length (bp) | 2,904 |
| Average contig sequence length (bp) | 32,819 |
| Contig N50 (bp) | 60,754 |
| Contig N90 (bp) | 15,685 |
Statistics of Genome Assembly
| Genome size (bp) | 4,594,633 |
| GC content | 67.33% |
| Contig sequence No. | 140 |
| Maximum contig sequence length (bp) | 162,886 |
| Minimum contig sequence length (bp) | 2,904 |
| Average contig sequence length (bp) | 32,819 |
| Contig N50 (bp) | 60,754 |
| Contig N90 (bp) | 15,685 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | ncRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 4,487 | 42 | 2 | 1 | 30 | 153 | 4,715 |