- Scientific Name
- Brassica rapa
- Common Names
- field mustard;
- Bioproject
- PRJCA001831
- Biosample
- SAMC111313
- Accession No.
- GWHABAB00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- 11,856,138 (SNP), 4,322,343 (Indel)
- Submitter Organization
- Molecular and genetic Lab, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences
- Contact
- Xiaowu Wang, wangxiaowu@caas.cn
- Sequence author(s)
- Xiaowu Wang
- Released Date
- 2021-05-14
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- MaSuRCA 3.2.6
- Sequencing & coverage
- Illumina HiSeq 2500 89.09
PacBio 25.56 - Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Xu Cai, et al. Impacts of allopolyploidization and structural variation on intraspecificdiversification in Brassica rapa. Genome Biology. 2021, 22.
Statistics of Genome Assembly
| Genome size (bp) | 337,460,561 |
| GC content | 36.90% |
| Scaffold sequence No. | 2,766 |
| Maximum scaffold sequence length (bp) | 9,301,423 |
| Minimum scaffold sequence length (bp) | 1,275 |
| Average scaffold sequence length (bp) | 122,003 |
| Scaffold N50 (bp) | 1,449,509 |
| Scaffold N90 (bp) | 44,957 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 46,084 | 46,084 |