Scientific Name
Brassica rapa
Common Names
field mustard;
Bioproject
PRJCA001831
Biosample
SAMC111299
Accession No.
GWHABAH00000000
GWH reannotation accession
-
GSA raw reads
-
GVM variations of the species
11,856,138 (SNP), 4,322,343 (Indel)
Submitter Organization
Molecular and genetic Lab, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences
Contact
Xiaowu Wang, wangxiaowu@caas.cn
Sequence author(s)
Xiaowu Wang
Released Date
2021-05-12
Assembly Level
Draft genome in chromosome level
Genome Representation
Full Genome
Assembly method
MaSuRCA 3.2.6
Sequencing & coverage
Illumina HiSeq 2500 116.28
PacBio 21.29
Download
DNA GFF RNA Protein
Publication(s)
Xu Cai, et al. Impacts of allopolyploidization and structural variation on intraspecificdiversification in Brassica rapa. Genome Biology. 2021, 22.
Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
GWHABAH00000000 - CCA Draft genome in chromosome level 2021-05-12 DNA GFF RNA Protein

Statistics of Genome Assembly

Genome size (bp) 341,616,342
GC content 36.63%
Genome sequence No. 1,404
Maximum genome sequence length (bp) 44,721,885
Minimum genome sequence length (bp) 2,500
Average genome sequence length (bp) 243,316
Genome sequence N50 (bp) 28,827,903
Genome sequence N90 (bp) 67,473
Annotation of Whole Genome Assembly
Protein Total
Total 47,687 47,687