- Scientific Name
- Brassica rapa
- Common Names
- field mustard;
- Bioproject
- PRJCA001831
- Biosample
- SAMC111300
- Accession No.
- GWHABAI00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- 11,856,138 (SNP), 4,322,343 (Indel)
- Submitter Organization
- Molecular and genetic Lab, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences
- Contact
- Xiaowu Wang, wangxiaowu@caas.cn
- Sequence author(s)
- Xiaowu Wang
- Released Date
- 2021-05-13
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- MaSuRCA 3.2.6
- Sequencing & coverage
- Illumina HiSeq 2500 127.49
PacBio 20.75 - Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Xu Cai, et al. Impacts of allopolyploidization and structural variation on intraspecificdiversification in Brassica rapa. Genome Biology. 2021, 22.
Statistics of Genome Assembly
| Genome size (bp) | 378,471,691 |
| GC content | 37.47% |
| Genome sequence No. | 2,500 |
| Maximum genome sequence length (bp) | 41,391,642 |
| Minimum genome sequence length (bp) | 845 |
| Average genome sequence length (bp) | 151,389 |
| Genome sequence N50 (bp) | 28,139,070 |
| Genome sequence N90 (bp) | 53,732 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 48,796 | 48,796 |