Genome Warehouse

Scientific Name: Brassica rapa
Common Names: field mustard;
Bioproject: PRJCA001831
Biosample: SAMC111307
Accession No.: GWHABAK00000000
GWH reannotation accession: -
GSA raw reads: -
GVM variations of the species: 11,856,138 (SNP), 4,322,343 (Indel)
Submitter Organization: Molecular and genetic Lab, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences
Contact: Xiaowu Wang, wangxiaowu@caas.cn
Sequence author(s): Xiaowu Wang
Released Date: 2021-05-14
Assembly Level: Draft genome in chromosome level
Genome Representation: Full Genome
Assembly method: MaSuRCA 3.2.6
Sequencing & coverage: PacBio 30.62
Illumina HiSeq 2500 120.74
Download: DNA GFF RNA CDS Protein
Publication(s): Xu Cai, et al. Impacts of allopolyploidization and structural variation on intraspecificdiversification in Brassica rapa. Genome Biology. 2021, 22.

Assembly Accession	GWH Reannotation Accession	Assembly Name	Assembly Level	Released Date	Download Files
GWHABAK00000000	-	PCB	Draft genome in chromosome level	2021-05-14	DNA GFF RNA CDS Protein

Genome size (bp)	389,255,959
GC content	37.73%
Genome sequence No.	3,013
Maximum genome sequence length (bp)	44,158,860
Minimum genome sequence length (bp)	709
Average genome sequence length (bp)	129,192
Genome sequence N50 (bp)	28,889,172
Genome sequence N90 (bp)	39,766

Annotation of Whole Genome Assembly

	Protein	Total
Total	47,515	47,515