- Scientific Name
- Oryza sativa Japonica Group
- Common Names
- Japonica rice; Japanese rice; Oryza sativa (japonica cultivar-group), Oryza sativa subsp. japonica
- Bioproject
- PRJCA016640
- Biosample
- SAMC3121181
- Accession No.
- GWHEQCB00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- College of Agronomy and Biotechnology, China Agricultural University
- Contact
- Yulong Wang, 15737927659@163.com
- Sequence author(s)
- Yulong Wang
- Released Date
- 2023-10-23
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- AllPaths CANU v1.7
- Sequencing & coverage
- PacBio 100.0
- Download
- DNA
- Publication(s)
- Yulong Wang. Upland rice genomic signatures of adaptation to drought resistance and navigation to molecular design breeding. PLANT BIOTECHNOLOGY JOURNAL. 2023.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHEQCB00000000 | - | IRAT109 | Draft genome in chromosome level | 2023-10-23 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 384,674,865 |
| GC content | 43.52% |
| Chromosomes sequence No. | 12 |
| Genome sequence No. | 65 |
| Maximum genome sequence length (bp) | 44,300,577 |
| Minimum genome sequence length (bp) | 1,000 |
| Average genome sequence length (bp) | 5,918,075 |
| Genome sequence N50 (bp) | 30,883,698 |
| Genome sequence N90 (bp) | 25,539,526 |