Genome Warehouse

Scientific Name: Malus domestica
Common Names: apple tree, cultivated apple; apple; Malus communis, Malus pumila auct., Malus pumila var. domestica, Malus sylvestris var. domestica, Malus x domestica, Pyrus malus, Pyrus malus var. domestica
Bioproject: PRJCA010465
Biosample: SAMC817691
Accession No.: GWHBJVD00000000.2
GWH reannotation accession: -
GSA raw reads: -
GVM variations of the species: 80,507,572 (SNP), 11,854,944 (Indel)
Submitter Organization: Horticulture, China Agricultural University
Contact: Wei Li(liwei0522898@163.com), Haochen Sun(fei_chen980615@163.com)
Sequence author(s): Wei Li, Chong Chu, Hui Li, Hengtao Zhang, Zhenhai Han
Released Date: 2023-11-30
Assembly Level: Draft genome in chromosome level
Genome Representation: Full Genome
Assembly method: hifiasm v0.15_r327
Sequencing & coverage: PacBio 80.53
Download: DNA GFF RNA CDS Protein
Reannotation Download: -
Publication(s): -

Assembly Accession	GWH Reannotation Accession	Assembly Name	Assembly Level	Released Date	Download Files
GWHBJVD00000000.2	-	Fuji haploid consensus genome	Draft genome in chromosome level	2023-11-30	DNA GFF RNA CDS Protein
GWHBJVD00000000	-	Fuji unphased genome	Draft genome in chromosome level	2023-12-05	DNA GFF RNA CDS Protein
GWHBJVD00000000.3	-	Fuji haploid consensus genome	Draft genome in chromosome level	2023-12-12	DNA GFF RNA CDS Protein
GWHBJVD00000000.1	-	Fuji haploid consensus genome	Draft genome in chromosome level	2025-11-30

Genome size (bp)	736,926,216
GC content	38.46%
Chromosomes sequence No.	11
Genome sequence No.	1,358
Maximum genome sequence length (bp)	56,797,885
Minimum genome sequence length (bp)	11,736
Average genome sequence length (bp)	542,656
Genome sequence N50 (bp)	36,771,785
Genome sequence N90 (bp)	16,528,878

Annotation of Whole Genome Assembly

Annotation Details