- Scientific Name
- Malus domestica
- Common Names
- apple tree, cultivated apple; apple; Malus communis, Malus pumila auct., Malus pumila var. domestica, Malus sylvestris var. domestica, Malus x domestica, Pyrus malus, Pyrus malus var. domestica
- Bioproject
- PRJCA010465
- Biosample
- SAMC817693
- Accession No.
- GWHBJVL00000000.2
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- 80,507,572 (SNP), 11,854,944 (Indel)
- Submitter Organization
- Horticulture, China Agricultural University
- Contact
- Wei Li(liwei0522898@163.com), Haochen Sun(fei_chen980615@163.com)
- Sequence author(s)
- Wei Li, Chong Chu, Hui Li, Hengtao Zhang, Zhenhai Han
- Released Date
- 2023-12-12
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- hifiasm v0.15_r334
- Sequencing & coverage
- PacBio 104.0
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBJVL00000000 | - | MM106 phased haploid B genome | Draft genome in chromosome level | 2023-11-11 |
DNA
GFF
RNA
CDS
Protein
|
| GWHBJVL00000000.1 | - | MM106 haplome B genome | Draft genome in chromosome level | 2023-11-28 |
DNA
GFF
RNA
CDS
Protein
|
| GWHBJVL00000000.2 | - | MM106 haplome B genome | Draft genome in chromosome level | 2023-12-12 |
DNA
GFF
RNA
CDS
Protein
|
Statistics of Genome Assembly
| Genome size (bp) | 682,527,317 |
| GC content | 38.39% |
| Chromosomes sequence No. | 17 |
| Genome sequence No. | 115 |
| Maximum genome sequence length (bp) | 55,900,941 |
| Minimum genome sequence length (bp) | 19,530 |
| Average genome sequence length (bp) | 5,935,020 |
| Genome sequence N50 (bp) | 37,779,591 |
| Genome sequence N90 (bp) | 31,423,387 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 50,166 | 50,166 |
| Others | 257 | 257 |
| Total | 50,423 | 50,423 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 2,356 | 2,356 |
| chr10 | 3,343 | 3,343 |
| chr11 | 3,123 | 3,123 |
| chr12 | 2,673 | 2,673 |
| chr13 | 3,364 | 3,364 |
| chr14 | 2,475 | 2,475 |
| chr15 | 4,455 | 4,455 |
| chr16 | 2,954 | 2,954 |
| chr17 | 2,897 | 2,897 |
| chr2 | 2,972 | 2,972 |
| chr3 | 3,025 | 3,025 |
| chr4 | 2,401 | 2,401 |
| chr5 | 3,589 | 3,589 |
| chr6 | 2,454 | 2,454 |
| chr7 | 2,839 | 2,839 |
| chr8 | 2,443 | 2,443 |
| chr9 | 2,803 | 2,803 |
| Others | 257 | 257 |
| Total | 50,423 | 50,423 |