- Scientific Name
- Malus domestica
- Common Names
- apple tree, cultivated apple; apple; Malus communis, Malus pumila auct., Malus pumila var. domestica, Malus sylvestris var. domestica, Malus x domestica, Pyrus malus, Pyrus malus var. domestica
- Bioproject
- PRJCA010465
- Biosample
- SAMC817691
- Accession No.
- GWHBJVH00000000.2
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- 80,507,572 (SNP), 11,854,944 (Indel)
- Submitter Organization
- Horticulture, China Agricultural University
- Contact
- Wei Li(liwei0522898@163.com), Haochen Sun(fei_chen980615@163.com)
- Sequence author(s)
- Wei Li, Chong Chu, Hui Li, Hengtao Zhang, Zhenhai Han
- Released Date
- 2023-12-12
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- hifiasm v0.15_r334
- Sequencing & coverage
- PacBio 81.0
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBJVH00000000 | - | Fuji phased haploid B genome | Draft genome in chromosome level | 2023-11-11 |
DNA
GFF
RNA
CDS
Protein
|
| GWHBJVH00000000.1 | - | Fuji haplome B genome | Draft genome in chromosome level | 2023-11-29 |
DNA
GFF
RNA
CDS
Protein
|
| GWHBJVH00000000.2 | - | Fuji haplome B genome | Draft genome in chromosome level | 2023-12-12 |
DNA
GFF
RNA
CDS
Protein
|
Statistics of Genome Assembly
| Genome size (bp) | 671,417,791 |
| GC content | 38.36% |
| Chromosomes sequence No. | 17 |
| Genome sequence No. | 164 |
| Maximum genome sequence length (bp) | 56,701,660 |
| Minimum genome sequence length (bp) | 13,501 |
| Average genome sequence length (bp) | 4,094,011 |
| Genome sequence N50 (bp) | 36,869,019 |
| Genome sequence N90 (bp) | 31,216,434 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 49,053 | 49,053 |
| Others | 64 | 64 |
| Total | 49,117 | 49,117 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 2,422 | 2,422 |
| chr10 | 3,368 | 3,368 |
| chr11 | 3,004 | 3,004 |
| chr12 | 2,560 | 2,560 |
| chr13 | 2,876 | 2,876 |
| chr14 | 2,483 | 2,483 |
| chr15 | 4,434 | 4,434 |
| chr16 | 2,883 | 2,883 |
| chr17 | 2,829 | 2,829 |
| chr2 | 2,916 | 2,916 |
| chr3 | 2,870 | 2,870 |
| chr4 | 2,377 | 2,377 |
| chr5 | 3,622 | 3,622 |
| chr6 | 2,448 | 2,448 |
| chr7 | 2,875 | 2,875 |
| chr8 | 2,348 | 2,348 |
| chr9 | 2,738 | 2,738 |
| Others | 64 | 64 |
| Total | 49,117 | 49,117 |