- Scientific Name
- Malus domestica
- Common Names
- apple tree, cultivated apple; apple; Malus communis, Malus pumila auct., Malus pumila var. domestica, Malus sylvestris var. domestica, Malus x domestica, Pyrus malus, Pyrus malus var. domestica
- Bioproject
- PRJCA010465
- Biosample
- SAMC817692
- Accession No.
- GWHBWDH00000000.2
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- 80,507,572 (SNP), 11,854,944 (Indel)
- Submitter Organization
- Horticulture, China Agricultural University
- Contact
- Wei Li(liwei0522898@163.com), Haochen Sun(fei_chen980615@163.com)
- Sequence author(s)
- Wei Li, Chong Chu, Hui Li, Hengtao Zhang, Zhenhai Han
- Released Date
- 2023-12-13
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- hifiasm v0.15_r327
- Sequencing & coverage
- PacBio 102.0
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBWDH00000000 | - | M9 unphased genome | Draft genome in chromosome level | 2023-11-11 |
DNA
GFF
RNA
CDS
Protein
|
| GWHBWDH00000000.1 | - | M9 haploid consensus genome | Draft genome in chromosome level | 2023-11-28 |
DNA
GFF
RNA
CDS
Protein
|
| GWHBWDH00000000.2 | - | M9 haploid consensus genome | Draft genome in chromosome level | 2023-12-13 |
DNA
GFF
RNA
CDS
Protein
|
Statistics of Genome Assembly
| Genome size (bp) | 702,392,343 |
| GC content | 38.38% |
| Chromosomes sequence No. | 17 |
| Genome sequence No. | 1,175 |
| Maximum genome sequence length (bp) | 56,621,166 |
| Minimum genome sequence length (bp) | 14,006 |
| Average genome sequence length (bp) | 597,781 |
| Genome sequence N50 (bp) | 38,572,049 |
| Genome sequence N90 (bp) | 31,013,531 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 48,195 | 48,195 |
| Others | 1,241 | 1,241 |
| Total | 49,436 | 49,436 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 2,276 | 2,276 |
| chr10 | 3,337 | 3,337 |
| chr11 | 3,087 | 3,087 |
| chr12 | 2,540 | 2,540 |
| chr13 | 2,723 | 2,723 |
| chr14 | 2,361 | 2,361 |
| chr15 | 4,278 | 4,278 |
| chr16 | 2,890 | 2,890 |
| chr17 | 2,757 | 2,757 |
| chr2 | 2,910 | 2,910 |
| chr3 | 2,975 | 2,975 |
| chr4 | 2,349 | 2,349 |
| chr5 | 3,507 | 3,507 |
| chr6 | 2,423 | 2,423 |
| chr7 | 2,808 | 2,808 |
| chr8 | 2,279 | 2,279 |
| chr9 | 2,695 | 2,695 |
| Others | 1,241 | 1,241 |
| Total | 49,436 | 49,436 |