- Scientific Name
- Malus domestica
- Common Names
- apple tree, cultivated apple; apple; Malus communis, Malus pumila auct., Malus pumila var. domestica, Malus sylvestris var. domestica, Malus x domestica, Pyrus malus, Pyrus malus var. domestica
- Bioproject
- PRJCA010465
- Biosample
- SAMC817691
- Accession No.
- GWHBJVF00000000.2
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- 80,507,572 (SNP), 11,854,944 (Indel)
- Submitter Organization
- Horticulture, China Agricultural University
- Contact
- Wei Li(liwei0522898@163.com), Haochen Sun(fei_chen980615@163.com)
- Sequence author(s)
- Wei Li, Chong Chu, Hui Li, Hengtao Zhang, Zhenhai Han
- Released Date
- 2023-12-13
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- hifiasm v0.15_r334
- Sequencing & coverage
- PacBio 81.0
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBJVF00000000 | - | Fuji phased haploid A genome | Draft genome in chromosome level | 2023-11-11 |
DNA
GFF
RNA
CDS
Protein
|
| GWHBJVF00000000.1 | - | Fuji haplome A genome | Draft genome in chromosome level | 2023-11-29 |
DNA
GFF
RNA
CDS
Protein
|
| GWHBJVF00000000.2 | - | Fuji haplome A genome | Draft genome in chromosome level | 2023-12-13 |
DNA
GFF
RNA
CDS
Protein
|
Statistics of Genome Assembly
| Genome size (bp) | 692,760,243 |
| GC content | 38.46% |
| Chromosomes sequence No. | 3 |
| Genome sequence No. | 206 |
| Maximum genome sequence length (bp) | 56,619,705 |
| Minimum genome sequence length (bp) | 13,308 |
| Average genome sequence length (bp) | 3,362,914 |
| Genome sequence N50 (bp) | 37,279,547 |
| Genome sequence N90 (bp) | 31,387,705 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 9,368 | 9,368 |
| Others | 40,214 | 40,214 |
| Total | 49,582 | 49,582 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr16 | 2,898 | 2,898 |
| chr3 | 2,881 | 2,881 |
| chr5 | 3,589 | 3,589 |
| Others | 40,214 | 40,214 |
| Total | 49,582 | 49,582 |