- Scientific Name
- Glycine max
- Common Names
- soybeans; soybean; Phaseolus max
- Bioproject
- PRJCA021300
- Biosample
- SAMC3175663
- Accession No.
- GWHEQVD00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR947539
- GVM variations of the species
- 40,350,378 (SNP), 12,368,700 (Indel)
- Submitter Organization
- -, Kunming Institute of Botany, Chinese Academy of Sciences
- Contact
- Rengang Zhang, zrg1989@qq.com
- Sequence author(s)
- Rengang Zhang
- Released Date
- 2024-02-18
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- hifiasm 0.19.5-r592
- Sequencing & coverage
- PacBio 60
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Kaihua Jia, et al. Telomere-to-telomere genome assemblies of cultivated and wild soybean provide insights into evolution and domestication under structural variation. Plant Communications. 2024, 5(8): 100919.
Statistics of Genome Assembly
| Genome size (bp) | 1,015,170,271 |
| GC content | 35.03% |
| Organellas sequence No. | 1 |
| Genome sequence No. | 26 |
| Maximum genome sequence length (bp) | 61,363,783 |
| Minimum genome sequence length (bp) | 67,776 |
| Average genome sequence length (bp) | 39,045,010 |
| Genome sequence N50 (bp) | 51,876,222 |
| Genome sequence N90 (bp) | 43,042,222 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | ncRNA | Total | |
|---|---|---|---|---|---|
| Chloroplast | 31 | 29 | 0 | 25 | 85 |
| Others | 72,522 | 1,017 | 950 | 3,092 | 77,581 |
| Total | 72,553 | 1,046 | 950 | 3,117 | 77,666 |
Annotation Details
| ChrID | Protein | tRNA | rRNA | ncRNA | Total |
|---|---|---|---|---|---|
| Chloroplast | 31 | 29 | 0 | 25 | 85 |
| Others | 72,522 | 1,017 | 950 | 3,092 | 77,581 |
| Total | 72,553 | 1,046 | 950 | 3,117 | 77,666 |