Genome Warehouse

Scientific Name: Malus domestica
Common Names: apple tree, cultivated apple; apple; Malus communis, Malus pumila auct., Malus pumila var. domestica, Malus sylvestris var. domestica, Malus x domestica, Pyrus malus, Pyrus malus var. domestica
Bioproject: PRJCA015452
Biosample: SAMC1150989
Accession No.: GWHCAWU00000000
GWH reannotation accession: -
GSA raw reads: -
GVM variations of the species: 80,507,572 (SNP), 11,854,944 (Indel)
Submitter Organization: Institute for Horticultural Plants, China Agricultural University
Contact: Wei Li(liwei0522898@163.com), Haochen Sun(fei_chen980615@163.com)
Sequence author(s): Wei Li, Chong Chu, Taikui Zhang, Haochen Sun, Shiyao Wang, Zeyuan Liu, Zijun Wang, Zhenhai Han
Released Date: 2025-02-10
Assembly Level: Draft genome in chromosome level
Genome Representation: Full Genome
Assembly method: hifiasm v0.15.2_r334
Sequencing & coverage: PacBio 40.74
Download: DNA GFF RNA CDS Protein
Reannotation Download: -
Publication(s): Wei Li, et al. Pan-genome analysis reveals the evolution and diversity of Malus. Nature Genetics. 2025, 57(5): 1274-1286.

Assembly Accession	GWH Reannotation Accession	Assembly Name	Assembly Level	Released Date	Download Files
GWHCAWU00000000	-	Malus domestica 'Golden Delicious' haploid consensus genome	Draft genome in chromosome level	2025-02-10	DNA GFF RNA CDS Protein

Genome size (bp)	676,405,881
GC content	38.32%
Chromosomes sequence No.	17
Genome sequence No.	42
Maximum genome sequence length (bp)	55,244,000
Minimum genome sequence length (bp)	1,000
Average genome sequence length (bp)	16,104,902
Genome sequence N50 (bp)	37,921,470
Genome sequence N90 (bp)	31,706,582

Annotation of Whole Genome Assembly

Annotation Details