- Scientific Name
- Hygroryza aristata
- Common Names
- -
- Bioproject
- PRJCA031396
- Biosample
- SAMC4275421
- Accession No.
- GWHFGLW00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Bioinformatics lab, Minjiang University
- Contact
- weiqi Tang, 85877053@qq.com
- Sequence author(s)
- weiqi Tang
- Released Date
- 2024-10-23
- Assembly Level
- Complete genome
- Genome Representation
- Full Genome
- Assembly method
- HiFiAsm 0.2
- Sequencing & coverage
- Pacbio HiFi 88
Ultra long ONT 64 - Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Liyao Yang, et al. Haplotype-resolved and gap-free genome of a floating aquatic plant from the Oryzeae tribe, Hygroryza aristata. BMC genomic data. 2025, 26(1): 23.
Statistics of Genome Assembly
| Genome size (bp) | 349,738,646 |
| GC content | 43.76% |
| Chromosomes sequence No. | 12 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 39,139 | 39,139 |
| Total | 39,139 | 39,139 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 5,896 | 5,896 |
| chr10 | 2,067 | 2,067 |
| chr11 | 2,191 | 2,191 |
| chr12 | 2,157 | 2,157 |
| chr2 | 4,359 | 4,359 |
| chr3 | 4,839 | 4,839 |
| chr4 | 3,653 | 3,653 |
| chr5 | 3,044 | 3,044 |
| chr6 | 3,176 | 3,176 |
| chr7 | 2,841 | 2,841 |
| chr8 | 2,556 | 2,556 |
| chr9 | 2,360 | 2,360 |
| Total | 39,139 | 39,139 |