- Scientific Name
- Hygroryza aristata
- Common Names
- -
- Bioproject
- PRJCA031397
- Biosample
- SAMC4275510
- Accession No.
- GWHFGNQ00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Bioinformatics lab, Minjiang University
- Contact
- weiqi Tang, 85877053@qq.com
- Sequence author(s)
- weiqi Tang
- Released Date
- 2024-10-24
- Assembly Level
- Complete genome
- Genome Representation
- Full Genome
- Assembly method
- HiFiAsm 0.2
- Sequencing & coverage
- Pacbio HiFi 88
Ultra long ONT 64 - Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Liyao Yang, et al. Haplotype-resolved and gap-free genome of a floating aquatic plant from the Oryzeae tribe, Hygroryza aristata. BMC genomic data. 2025, 26(1): 23.
Statistics of Genome Assembly
| Genome size (bp) | 347,978,894 |
| GC content | 43.76% |
| Chromosomes sequence No. | 12 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 38,746 | 38,746 |
| Total | 38,746 | 38,746 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 5,781 | 5,781 |
| chr10 | 2,039 | 2,039 |
| chr11 | 2,183 | 2,183 |
| chr12 | 2,138 | 2,138 |
| chr2 | 4,342 | 4,342 |
| chr3 | 4,786 | 4,786 |
| chr4 | 3,714 | 3,714 |
| chr5 | 3,037 | 3,037 |
| chr6 | 3,110 | 3,110 |
| chr7 | 2,865 | 2,865 |
| chr8 | 2,502 | 2,502 |
| chr9 | 2,249 | 2,249 |
| Total | 38,746 | 38,746 |