- Scientific Name
- Capsicum annuum var. glabriusculum
- Common Names
- American bird pepper, chilipiquin, chiltepe; Capsicum annuum var. aviculare
- Bioproject
- PRJCA019635
- Biosample
- SAMC3395494
- Accession No.
- GWHFIJL00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- CRR1061387
- GVM variations of the species
- -
- Submitter Organization
- bioinfomatics lab, 1Vegetable Research Institute, Guangdong Academy of Agricultural Sciences, Guangdong Key Laboratory for New Technology Research of Vegetables,
- Contact
- lingkui zhang, 1570263833@qq.com
- Sequence author(s)
- kang zhang
- Released Date
- 2025-01-06
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- hifiasm 0.21.0-r686
- Sequencing & coverage
- Hifi 30
- Download
- DNA
- Publication(s)
- Kang Zhang, et al. Transposon proliferation drives genome architecture and regulatory evolution in wild and domesticated peppers. Nature plants. 2025, 11(2): 359-375.0.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHFIJL00000000.1 | - | Caga_v2 | Draft genome in scaffold level | 2025-01-06 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 3,077,945,744 |
| GC content | 34.90% |
| Scaffold sequence No. | 137 |
| Maximum scaffold sequence length (bp) | 335,167,660 |
| Minimum scaffold sequence length (bp) | 22,597 |
| Average scaffold sequence length (bp) | 22,466,757 |
| Scaffold N50 (bp) | 262,449,941 |
| Scaffold N90 (bp) | 176,375,541 |