- Scientific Name
- Sorghum virgatum
- Common Names
- Andropogon sorghum var. virgatus, Sorghum bicolor var. virgatum
- Bioproject
- PRJCA035881
- Biosample
- SAMC4679961
- Accession No.
- GWHFJJD00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- CRR1628477
- GVM variations of the species
- -
- Submitter Organization
- CAB, China Agricultural University
- Contact
- Zhongwei Lin(zlin@cau.edu.cn)
- Sequence author(s)
- Xiaojian Fang
- Released Date
- 2025-05-05
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Hifiasm 0.15.1-r334
- Sequencing & coverage
- PacBio 45.1
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Xiaojian Fang, et al. A high-quality chromosome-scale genome assembly of the wild sorghum (Sorghum virgatum). Scientific Data. 2025, 12(1): 1593.
Statistics of Genome Assembly
| Genome size (bp) | 785,518,233 |
| GC content | 43.80% |
| Chromosomes sequence No. | 10 |
| Genome sequence No. | 2,513 |
| Maximum genome sequence length (bp) | 79,190,086 |
| Minimum genome sequence length (bp) | 1,000 |
| Average genome sequence length (bp) | 312,582 |
| Genome sequence N50 (bp) | 62,468,865 |
| Genome sequence N90 (bp) | 320,000 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 37,395 | 37,395 |
| Others | 1,451 | 1,451 |
| Total | 38,846 | 38,846 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 6,384 | 6,384 |
| chr10 | 3,138 | 3,138 |
| chr2 | 4,867 | 4,867 |
| chr3 | 5,281 | 5,281 |
| chr4 | 4,229 | 4,229 |
| chr5 | 2,373 | 2,373 |
| chr6 | 3,330 | 3,330 |
| chr7 | 2,728 | 2,728 |
| chr8 | 2,106 | 2,106 |
| chr9 | 2,959 | 2,959 |
| Others | 1,451 | 1,451 |
| Total | 38,846 | 38,846 |