- Scientific Name
- Beta vulgaris
- Common Names
- beet; Beta altissima
- Bioproject
- PRJCA002725
- Biosample
- SAMC186834
- Accession No.
- GWHAMMD00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR138480
- GVM variations of the species
- -
- Submitter Organization
- College of Life Science, Inner Mongolia Academy of Agricultural & Animal Husbandry Sciences; Fujian Normal University; Fujian Normal University
- Contact
- Jingping Fang(jinphia@163.com)
- Sequence author(s)
- Jingping Fang, Wenjin He, Youqiang Chen, Xiaodong Li, Chen Bai, Huizhong Zhang
- Released Date
- 2023-02-24
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Canu v1.7
- Sequencing & coverage
- PacBio 94.0
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Xiaodong Li, et al. Genomic and transcriptomic-based analysis of agronomic traits in sugar beet (Beta vulgaris L.) pure line IMA1. Frontiers in Plant Science. 2022, 13: 1028885.
Statistics of Genome Assembly
| Genome size (bp) | 786,585,627 |
| GC content | 35.85% |
| Chromosomes sequence No. | 9 |
| Genome sequence No. | 257 |
| Maximum genome sequence length (bp) | 112,635,178 |
| Minimum genome sequence length (bp) | 2,633 |
| Average genome sequence length (bp) | 3,060,644 |
| Genome sequence N50 (bp) | 93,062,694 |
| Genome sequence N90 (bp) | 71,242,761 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 34,621 | 34,621 |
| Others | 118 | 118 |
| Total | 34,739 | 34,739 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 3,584 | 3,584 |
| chr2 | 3,093 | 3,093 |
| chr3 | 4,968 | 4,968 |
| chr4 | 4,387 | 4,387 |
| chr5 | 4,848 | 4,848 |
| chr6 | 3,844 | 3,844 |
| chr7 | 3,338 | 3,338 |
| chr8 | 3,001 | 3,001 |
| chr9 | 3,558 | 3,558 |
| Others | 118 | 118 |
| Total | 34,739 | 34,739 |