- Scientific Name
- Brassica juncea
- Common Names
- brown mustard, Indian mustard;
- Bioproject
- PRJCA033081
- Biosample
- SAMC4781973
- Accession No.
- GWHFQTP00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- the College of Agronomy, Northwest A&F University
- Contact
- Jihong Hu(hujh05@nwafu.edu.cn)
- Sequence author(s)
- Ru Zhang, Chunyan Dai, Ruolin Gong, Keqi Li, Cuiping Zhang, Zhanling An, Aixia Xu, Han Wang, Jungang Dong, Zhen Huang, Jihong Hu
- Released Date
- 2025-03-26
- Assembly Level
- Complete genome
- Genome Representation
- Full Genome
- Assembly method
- hifiasm v0.19.8-r603
3DNA v1
TGS-GapCloser v1.2.1 - Sequencing & coverage
- HiFi 87.12
ONT 35.08
Hi-C 84.82
Illumina Nova-seq 6000 50.0 - Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Ru Zhang, et al. Gap-free genome assembly and pan-genome of Brassica juncea provide insights into seed quality improvement and environmental adaptation. Plant Communications. 2025, 6(6): 101298.
Statistics of Genome Assembly
| Genome size (bp) | 980,455,280 |
| GC content | 37.90% |
| Chromosomes sequence No. | 18 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 90,821 | 90,821 |
| Others | 4,400 | 4,400 |
| Total | 95,221 | 95,221 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chrA1 | 3,879 | 3,879 |
| chrA10 | 3,178 | 3,178 |
| chrA2 | 4,041 | 4,041 |
| chrA3 | 5,637 | 5,637 |
| chrA4 | 2,834 | 2,834 |
| chrA5 | 3,734 | 3,734 |
| chrA6 | 4,049 | 4,049 |
| chrA7 | 3,790 | 3,790 |
| chrA8 | 3,001 | 3,001 |
| chrA9 | 6,823 | 6,823 |
| chrB2 | 8,077 | 8,077 |
| chrB3 | 6,486 | 6,486 |
| chrB4 | 5,553 | 5,553 |
| chrB5 | 6,701 | 6,701 |
| chrB6 | 6,042 | 6,042 |
| chrB7 | 5,310 | 5,310 |
| chrB8 | 6,575 | 6,575 |
| chrB1 | 5,111 | 5,111 |
| Others | 4,400 | 4,400 |
| Total | 95,221 | 95,221 |