- Scientific Name
- Escherichia
- Common Names
- -
- Bioproject
- PRJCA037694
- Biosample
- SAMC4943735
- Accession No.
- GWHFYPJ00000000.1
- GWH reannotation accession
- GWHRA_FYPJ00000000.1
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- State Key Laboratory of Pathogen and Biosecurity, Academy of Military Medical Sciences
- Contact
- Lifeng Du(nbdulf@163.com)
- Sequence author(s)
- LiFeng Du, Wenyu Shi, Xiaoming Cui, Huiming Fan, Jiafu Jiang, Bian Cai, Runze Ye, Qian Wang, Mingzhu Zhang, Tingting Yuan, Luoyuan Xia, Xiangdong Ruan, Qiaocheng Chang, Chunhong Du, Tengcheng Que, Xin Wang, Xiaohu Han, Tianci Yang, Baogui Jiang, JianYing Chen, Xiaorun Wang, Liangfei Tan, Yiwen Liu, Liangli Deng, Yan Liu, Yan Zhu, Yusheng Pan, Ning Wang, Zhetao Lin, Lianfeng Li, Cheng Li, Shijing Shen, Yating Liu, Di Tian, Xiaoyu Han, Juan Wang, Yifei Wang, Wanying Gao, Yuyu Li, Tao Xiong, Tianhong Wang, Xiaoyu Shi, Daiyun Zhu, Jinguo Zhu, Chongcai Wang, Wenqiang Shi, Lin Zhan, Zhihong Liu, Dan Feng, Lin Zhao, Yi Sun, Jinfeng Wang, Na Jia, Fangqing Zhao, Wuchun Cao
- Released Date
- 2025-05-18
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- Megahit v1.2.9
- Sequencing & coverage
- Illumina 34.35
- Download
- DNA
- Reannotation Download
- Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein
- Publication(s)
- Lifeng Du, et al. Genome-resolved metagenomics reveals microbiome diversity across 48 tick species. Nature Microbiology. 2025, 10(10): 2631-2645.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHFYPJ00000000.1 | GWHRA_FYPJ00000000.1 | XJRt.1087_MAG_42 | Draft genome in scaffold level | 2025-05-18 |
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 4,217,722 |
| GC content | 50.96% |
| Scaffold sequence No. | 43 |
| Maximum scaffold sequence length (bp) | 306,651 |
| Minimum scaffold sequence length (bp) | 3,183 |
| Average scaffold sequence length (bp) | 98,087 |
| Scaffold N50 (bp) | 160,155 |
| Scaffold N90 (bp) | 55,629 |
Statistics of Genome Assembly
| Genome size (bp) | 4,217,722 |
| GC content | 50.96% |
| Scaffold sequence No. | 43 |
| Maximum scaffold sequence length (bp) | 306,651 |
| Minimum scaffold sequence length (bp) | 3,183 |
| Average scaffold sequence length (bp) | 98,087 |
| Scaffold N50 (bp) | 160,155 |
| Scaffold N90 (bp) | 55,629 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | ncRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 3,940 | 58 | 1 | 8 | 115 | 63 | 4,185 |