- Scientific Name
- Raphanus sativus var. niger
- Common Names
- daikon, Japanese radish, kaiware daikon; Chinese radish; Raphanus sativus Chinese Radish Group, Raphanus sativus var. hortensis, Raphanus sativus var. longipinnatus
- Bioproject
- PRJCA003033
- Biosample
- SAMC199879
- Accession No.
- GWHANWD00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR154511, CRR154507, CRR154506, CRR154509, CRR154508, more
- GVM variations of the species
- -
- Submitter Organization
- Germplasum Research, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences
- Contact
- Xiaohui Zhang, zhangxiaohui01@caas.cn
- Sequence author(s)
- Xiaohui Zhang, Xixiang Li
- Released Date
- 2021-08-10
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Canu 1.7.1
- Sequencing & coverage
- PacBio 135.0
- Download
-
DNA
GFF
RNA
Protein
- Publication(s)
- Xiaohui Zhang, et al. Pan-genome of Raphanus highlights genetic variation and introgression among domesticated, wild and weedy radishes. Molecular Plant, 2021.
Statistics of Genome Assembly
| Genome size (bp) | 459,860,633 |
| GC content | 36.41% |
| Chromosomes sequence No. | 9 |
| Genome sequence No. | 222 |
| Maximum genome sequence length (bp) | 62,195,468 |
| Minimum genome sequence length (bp) | 1,143 |
| Average genome sequence length (bp) | 2,071,444 |
| Genome sequence N50 (bp) | 51,923,123 |
| Genome sequence N90 (bp) | 37,522,196 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 56,611 | 56,611 |
| Others | 164 | 164 |
| Total | 56,775 | 56,775 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 8,174 | 8,174 |
| chr2 | 6,458 | 6,458 |
| chr3 | 5,184 | 5,184 |
| chr4 | 8,246 | 8,246 |
| chr5 | 7,489 | 7,489 |
| chr6 | 4,706 | 4,706 |
| chr7 | 5,536 | 5,536 |
| chr8 | 5,110 | 5,110 |
| chr9 | 5,708 | 5,708 |
| Others | 164 | 164 |
| Total | 56,775 | 56,775 |