- Scientific Name
- Raphanus sativus var. niger
- Common Names
- daikon, Japanese radish, kaiware daikon; Chinese radish; Raphanus sativus Chinese Radish Group, Raphanus sativus var. hortensis, Raphanus sativus var. longipinnatus
- Bioproject
- PRJCA003033
- Biosample
- SAMC199882
- Accession No.
- GWHANWK00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR233046, CRR233045, CRR233048, CRR233047
- GVM variations of the species
- -
- Submitter Organization
- Germplasum Research, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences
- Contact
- Xixiang Li, lixixiang@caas.cn
- Sequence author(s)
- Xiaohui Zhang
- Released Date
- 2021-08-10
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- MECAT 1.0
- Sequencing & coverage
- PacBio 65.0
Illumina HiSeq x ten 116.0 - Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Xiaohui Zhang, et al. Pan-genome of Raphanus highlights genetic variation and introgression among domesticated, wild and weedy radishes. Molecular Plant, 2021.
Statistics of Genome Assembly
| Genome size (bp) | 465,143,571 |
| GC content | 36.76% |
| Genome sequence No. | 56 |
| Maximum genome sequence length (bp) | 63,634,861 |
| Minimum genome sequence length (bp) | 38,381 |
| Average genome sequence length (bp) | 8,306,135 |
| Genome sequence N50 (bp) | 47,923,910 |
| Genome sequence N90 (bp) | 30,734,139 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 49,600 | 49,600 |