- Scientific Name
- Raphanus raphanistrum subsp. landra
- Common Names
- Raphanus landra
- Bioproject
- PRJCA003033
- Biosample
- SAMC199887
- Accession No.
- GWHANWL00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR233069, CRR233071, CRR233070, CRR233072
- GVM variations of the species
- -
- Submitter Organization
- Germplasum Research, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences
- Contact
- Xixiang Li, lixixiang@caas.cn
- Sequence author(s)
- Xiaohui Zhang
- Released Date
- 2021-08-10
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- MECAT 1.0
- Sequencing & coverage
- PacBio 62.0
Illumina HiSeq X TEN 104.0 - Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Xiaohui Zhang, et al. Pan-genome of Raphanus highlights genetic variation and introgression among domesticated, wild and weedy radishes. Molecular Plant, 2021.
Statistics of Genome Assembly
| Genome size (bp) | 418,324,655 |
| GC content | 36.08% |
| Genome sequence No. | 30 |
| Maximum genome sequence length (bp) | 69,563,912 |
| Minimum genome sequence length (bp) | 5,872 |
| Average genome sequence length (bp) | 13,944,155 |
| Genome sequence N50 (bp) | 43,122,860 |
| Genome sequence N90 (bp) | 38,055,895 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 46,064 | 46,064 |