This sample is a genetically modified line, and it was constructed using the pOX expression system.
- Scientific Name
- Carica papaya
- Common Names
- mamon; papaya;
- Bioproject
- PRJCA036247
- Biosample
- SAMC5750672
- Accession No.
- GWHGGHO00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University
- Contact
- Jingjing Yue, zxb344@126.com
- Sequence author(s)
- Jingjing Yue
- Released Date
- 2025-08-15
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Hifiasm v0.24.0-r702
- Sequencing & coverage
- PacBio Sequel IIe 30
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 342,740,483 |
| GC content | 35.56% |
| Chromosomes sequence No. | 10 |
| Genome sequence No. | 13 |
| Maximum genome sequence length (bp) | 47,375,751 |
| Minimum genome sequence length (bp) | 26,642 |
| Average genome sequence length (bp) | 26,364,653 |
| Genome sequence N50 (bp) | 37,153,833 |
| Genome sequence N90 (bp) | 30,299,180 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 19,664 | 19,664 |
| Others | 14 | 14 |
| Total | 19,678 | 19,678 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 2,439 | 2,439 |
| chr2 | 2,490 | 2,490 |
| chr3 | 2,355 | 2,355 |
| chr4 | 2,289 | 2,289 |
| chr5 | 2,043 | 2,043 |
| chr6 | 2,175 | 2,175 |
| chr7 | 2,062 | 2,062 |
| chr8 | 1,794 | 1,794 |
| chr9 | 1,822 | 1,822 |
| chrY | 195 | 195 |
| Others | 14 | 14 |
| Total | 19,678 | 19,678 |