This sample is a genetically modified line, and it was constructed using the pOX expression system.
- Scientific Name
- Carica papaya
- Common Names
- mamon; papaya;
- Bioproject
- PRJCA036247
- Biosample
- SAMC5750674
- Accession No.
- GWHGGHQ00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University
- Contact
- Jingjing Yue, zxb344@126.com
- Sequence author(s)
- Jingjing Yue
- Released Date
- 2025-08-15
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Hifiasm v0.24.0-r702
- Sequencing & coverage
- PacBio Sequel IIe 30
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 340,580,661 |
| GC content | 35.72% |
| Chromosomes sequence No. | 10 |
| Genome sequence No. | 16 |
| Maximum genome sequence length (bp) | 47,202,226 |
| Minimum genome sequence length (bp) | 29,682 |
| Average genome sequence length (bp) | 21,286,291 |
| Genome sequence N50 (bp) | 37,037,890 |
| Genome sequence N90 (bp) | 30,877,066 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 19,802 | 19,802 |
| Others | 16 | 16 |
| Total | 19,818 | 19,818 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 2,440 | 2,440 |
| chr2 | 2,485 | 2,485 |
| chr3 | 2,400 | 2,400 |
| chr4 | 2,318 | 2,318 |
| chr5 | 2,065 | 2,065 |
| chr6 | 2,236 | 2,236 |
| chr7 | 2,059 | 2,059 |
| chr8 | 1,845 | 1,845 |
| chr9 | 1,799 | 1,799 |
| chrY | 155 | 155 |
| Others | 16 | 16 |
| Total | 19,818 | 19,818 |