This sample is a genetically modified line, and it was constructed using the pOX expression system.
- Scientific Name
- Carica papaya
- Common Names
- mamon; papaya;
- Bioproject
- PRJCA036247
- Biosample
- SAMC5750689
- Accession No.
- GWHGGIF00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University
- Contact
- Jingjing Yue, zxb344@126.com
- Sequence author(s)
- Jingjing Yue
- Released Date
- 2025-08-15
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Hifiasm v0.24.0-r702
- Sequencing & coverage
- PacBio Sequel IIe 30
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 343,039,023 |
| GC content | 35.63% |
| Chromosomes sequence No. | 10 |
| Genome sequence No. | 12 |
| Maximum genome sequence length (bp) | 45,979,060 |
| Minimum genome sequence length (bp) | 66,039 |
| Average genome sequence length (bp) | 28,586,585 |
| Genome sequence N50 (bp) | 37,169,312 |
| Genome sequence N90 (bp) | 30,264,026 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 19,433 | 19,433 |
| Total | 19,433 | 19,433 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 2,461 | 2,461 |
| chr2 | 2,443 | 2,443 |
| chr3 | 2,340 | 2,340 |
| chr4 | 2,208 | 2,208 |
| chr5 | 2,030 | 2,030 |
| chr6 | 2,205 | 2,205 |
| chr7 | 2,020 | 2,020 |
| chr8 | 1,839 | 1,839 |
| chr9 | 1,821 | 1,821 |
| chrY | 66 | 66 |
| Total | 19,433 | 19,433 |