- Scientific Name
- Kandelia obovata
- Common Names
- -
- Bioproject
- PRJCA002330
- Biosample
- SAMC141139
- Accession No.
- GWHACBH00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR120126, CRR120127
- GVM variations of the species
- -
- Submitter Organization
- Forestry College, Fujian Agriculture and Forestry University
- Contact
- Zou Shuang-Quan, zbaolifafu@126.com
- Sequence author(s)
- Zou Shuang-Quan, Hu Min-Jie, Sun Wei-Hong
- Released Date
- 2020-03-10
- Assembly Level
- Draft genome in contig level
- Genome Representation
- Full Genome
- Assembly method
- SOAPdenovo 2.0
- Sequencing & coverage
- PacBio 117.92
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Min-Jie Hu, et al. Chromosome-scale assembly of the Kandelia obovata genome. Horticulture Research. 2020, 7: 75.
Statistics of Genome Assembly
| Genome size (bp) | 177,986,124 |
| GC content | 35.10% |
| Contig sequence No. | 74 |
| Maximum contig sequence length (bp) | 13,452,090 |
| Minimum contig sequence length (bp) | 36,331 |
| Average contig sequence length (bp) | 2,405,218 |
| Contig N50 (bp) | 5,743,053 |
| Contig N90 (bp) | 2,939,642 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 19,138 | 19,138 |