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  • Penaeus japonicus
  • Mj_TUMSAT_v1.0
    • Scientific Name
    Penaeus japonicus
    Common Names
    Marsupenaeus japonicus, Penaeus (Marsupenaeus) japonicus, Penaeus (Melicertus) japonicus
    Bioproject
    PRJDB11151
    Biosample
    SAMD00276454
    Accession No.
    GCA_017312705.1
    RefSeq Accession No.
    GCF_017312705.1
    RefSeq vs GenBank similarity
    different
    Source
    NCBI
    External Links
    NCBI
    Submitter Organization
    Laboratory of Genome Science Graduate School of Marine Science and Technology, Tokyo University of Marine Science and Technology
    Released Date
    2023-11-02
    NCBI Released Date
    2021-02-12
    Assembly Level
    Draft genome in scaffold level
    Genome Representation
    Full Genome
    Download
    DNA
    RefSeq Download
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    Publication(s)
    -
    Assembly Accession RefSeq Accession RefSeq vs GenBank similarity Assembly Name Assembly Level NCBI Released Date Download Files
    GCA_017312705.2 - - Mj_TUMSAT_v1.0 Draft genome in chromosome level 2021-06-07 DNA GFF RNA CDS Protein
    GCA_017312705.1 GCF_017312705.1 different Mj_TUMSAT_v1.0 Draft genome in chromosome level 2021-02-12 DNA
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein

    Statistics of Genome Assembly

    Genome size (bp) 1,704,994,957
    Chromosomes, organellas and plasmids sequnece No. 0
    Genome sequence No. 18,210
    Scaffold sequence No. 18,210
    Scaffold L50 2,083
    Scaffold N50 (bp) 234,949
    Scaffold N75 (bp) 118,822
    Scaffold N90 (bp) 56,117
    Contig sequence No. 28,883
    Contig L50 3,692
    Contig N50 (bp) 132,830
    Unique components No. 18,210
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 10,673
    Ns gap sequence region length (bp) 35,891,331
    Gaps No. between scaffolds 0

    Statistics of Genome Assembly

    Genome size (bp) 1,705,010,925
    Chromosomes, organellas and plasmids sequnece No. 1
    Genome sequence No. 18,211
    GC content 34.5
    Scaffold sequence No. 18,211
    Scaffold L50 2,083
    Scaffold N50 (bp) 234,949
    Scaffold N75 (bp) 118,822
    Scaffold N90 (bp) 56,117
    Contig sequence No. 28,884
    Contig L50 3,692
    Contig N50 (bp) 132,830
    Unique components No. 18,211
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 10,673
    Ns gap sequence region length (bp) 35,891,331
    Gaps No. between scaffolds 0
    Annotation of Whole Genome Assembly
    asse
    Protein trna rrna ncrna Pseudogene Others Total
    Total 22301 1834 951490 410 1 26131