- Scientific Name
- Penaeus japonicus
- Common Names
- Marsupenaeus japonicus, Penaeus (Marsupenaeus) japonicus, Penaeus (Melicertus) japonicus
- Bioproject
- PRJDB11151
- Biosample
- SAMD00276454
- Accession No.
- GCA_017312705.2
- RefSeq Accession No.
- -
- RefSeq vs GenBank similarity
- -
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Laboratory of Genome Science Graduate School of Marine Science and Technology, Tokyo University of Marine Science and Technology
- Released Date
- 2023-11-16
- NCBI Released Date
- 2021-06-07
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Download
- DNA GFF RNA CDS Protein
- RefSeq Download
- -
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_017312705.2 | - | - | Mj_TUMSAT_v1.0 | Draft genome in chromosome level | 2021-06-07 | DNA GFF RNA CDS Protein |
| GCA_017312705.1 | GCF_017312705.1 | different | Mj_TUMSAT_v1.0 | Draft genome in chromosome level | 2021-02-12 | DNA RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
Statistics of Genome Assembly
| Genome size (bp) | 1,705,010,926 |
| Chromosomes, organellas and plasmids sequnece No. | 1 |
| Genome sequence No. | 18,211 |
| Scaffold sequence No. | 18,211 |
| Scaffold L50 | 2,083 |
| Scaffold N50 (bp) | 234,949 |
| Scaffold N75 (bp) | 118,822 |
| Scaffold N90 (bp) | 56,117 |
| Contig sequence No. | 28,884 |
| Contig L50 | 3,692 |
| Contig N50 (bp) | 132,830 |
| Unique components No. | 18,211 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 10,673 |
| Ns gap sequence region length (bp) | 35,891,331 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 13 | 0 | 0 | 0 | 0 | 0 | 13 |