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  • Raphanus sativus
  • Rs1.0
    • Scientific Name
    Raphanus sativus
    Common Names
    radish;
    Bioproject
    PRJNA239785
    Biosample
    SAMN03084390
    Accession No.
    GCA_000801105.2
    RefSeq Accession No.
    GCF_000801105.1
    RefSeq vs GenBank similarity
    different
    Source
    NCBI
    External Links
    NCBI
    Submitter Organization
    Dr. Namshin Kim at KRIBB
    Released Date
    2025-06-11
    NCBI Released Date
    2015-09-29
    Assembly Level
    Draft genome in scaffold level
    Genome Representation
    Full Genome
    Download
    DNA
    RefSeq Download
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    Publication(s)
    -
    Assembly Accession RefSeq Accession RefSeq vs GenBank similarity Assembly Name Assembly Level NCBI Released Date Download Files
    GCA_000801105.3 GCF_000801105.2 - ASM80110v3 Draft genome in scaffold level 2023-02-09 DNA GFF RNA CDS Protein
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    GCA_000801105.2 GCF_000801105.1 different Rs1.0 Draft genome in chromosome level 2015-09-29 DNA
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein

    Statistics of Genome Assembly

    Genome size (bp) 426,202,243
    Chromosomes, organellas and plasmids sequnece No. 0
    Genome sequence No. 10,674
    GC content 35.5
    Scaffold sequence No. 10,674
    Scaffold L50 5
    Scaffold N50 (bp) 38,354,807
    Scaffold N75 (bp) 26,309,735
    Scaffold N90 (bp) 17,180
    Contig sequence No. 35,743
    Contig L50 5,035
    Contig N50 (bp) 19,861
    Unique components No. 10,674
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 25,069
    Ns gap sequence region length (bp) 54,591,061
    Gaps No. between scaffolds 0

    Statistics of Genome Assembly

    Genome size (bp) 426,614,037
    Chromosomes, organellas and plasmids sequnece No. 2
    Genome sequence No. 10,676
    GC content 35.5
    Scaffold sequence No. 10,676
    Scaffold L50 5
    Scaffold N50 (bp) 38,354,807
    Scaffold N75 (bp) 26,309,735
    Scaffold N90 (bp) 17,197
    Contig sequence No. 35,745
    Contig L50 5,028
    Contig N50 (bp) 19,900
    Unique components No. 10,676
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 25,069
    Ns gap sequence region length (bp) 54,591,061
    Gaps No. between scaffolds 0
    Annotation of Whole Genome Assembly
    asse
    Protein trna rrna ncrna Pseudogene Others Total
    Total 49855 1384 113912 3583 0 58745