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  • Raphanus sativus
  • ASM80110v3
    • Scientific Name
    Raphanus sativus
    Common Names
    radish;
    Bioproject
    PRJNA239785
    Biosample
    SAMN03084390
    Accession No.
    GCA_000801105.3
    RefSeq Accession No.
    GCF_000801105.2
    RefSeq vs GenBank similarity
    -
    Source
    NCBI
    External Links
    NCBI
    Submitter Organization
    Myongji University
    Released Date
    2023-11-23
    NCBI Released Date
    2023-02-09
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Download
    DNA GFF RNA CDS Protein
    RefSeq Download
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    Publication(s)
    -
    Assembly Accession RefSeq Accession RefSeq vs GenBank similarity Assembly Name Assembly Level NCBI Released Date Download Files
    GCA_000801105.3 GCF_000801105.2 - ASM80110v3 Draft genome in scaffold level 2023-02-09 DNA GFF RNA CDS Protein
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    GCA_000801105.2 GCF_000801105.1 different Rs1.0 Draft genome in chromosome level 2015-09-29 DNA
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein

    Statistics of Genome Assembly

    Genome size (bp) 433,430,583
    Chromosomes, organellas and plasmids sequnece No. 9
    Genome sequence No. 6,422
    GC content 36
    Scaffold sequence No. 6,422
    Scaffold L50 5
    Scaffold N50 (bp) 37,282,294
    Scaffold N75 (bp) 25,868,459
    Scaffold N90 (bp) 20,179
    Contig sequence No. 9,120
    Contig L50 459
    Contig N50 (bp) 184,024
    Unique components No. 6,422
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 2,698
    Ns gap sequence region length (bp) 269,710
    Gaps No. between scaffolds 0
    Annotation of Whole Genome Assembly
    Protein trna rrna ncrna Pseudogene Others Total
    Total 52314 0 0 0 0 0 52314

    Statistics of Genome Assembly

    Genome size (bp) 433,842,377
    Chromosomes, organellas and plasmids sequnece No. 11
    Genome sequence No. 6,424
    GC content 36
    Scaffold sequence No. 6,424
    Scaffold L50 5
    Scaffold N50 (bp) 37,282,294
    Scaffold N75 (bp) 25,868,459
    Scaffold N90 (bp) 20,211
    Contig sequence No. 9,122
    Contig L50 459
    Contig N50 (bp) 184,364
    Unique components No. 6,424
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 2,698
    Ns gap sequence region length (bp) 269,710
    Gaps No. between scaffolds 0
    Annotation of Whole Genome Assembly
    asse
    Protein trna rrna ncrna Pseudogene Others Total
    Total 51440 1462 10396952 4348 0 65241