- Scientific Name
- Camellia sinensis
- Common Names
- black tea; Thea sinensis
- Bioproject
- PRJNA510226
- Biosample
- SAMN06329939
- Accession No.
- GCA_004153795.1
- RefSeq Accession No.
- GCF_004153795.1
- RefSeq vs GenBank similarity
- different
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Anhui Agricultural University
- Released Date
- 2023-10-31
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Download
- DNA GFF
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | Release Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_004153795.1 | GCF_004153795.1 | different | AHAU_CSS_1 | Draft genome in chromosome level | 2019-02-11 | DNA GFF RefSeq DNA RefSeq GFF RefSeq RNA RefSeq Protein |
| GCA_004153795.2 | - | - | AHAU_CSS_2 | Draft genome in chromosome level | 2019-04-21 | DNA GFF RNA Protein |
Statistics of Genome Assembly
| Genome size (bp) | 3,105,212,962 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 14,027 |
| Contig sequence No. | 93,350 |
| Contig L50 | 12,505 |
| Contig N50 (bp) | 67,047 |
| Unique components No. | 14,027 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 79,323 |
| Ns gap sequence region length (bp) | 244,909,363 |
| Gaps No. between scaffolds | 0 |
Statistics of Genome Assembly
| Genome size (bp) | 3,105,370,065 |
| Chromosomes, organellas and plasmids sequnece No. | 1 |
| Genome sequence No. | 14,028 |
| GC content | 38 |
| Scaffold sequence No. | 14,028 |
| Scaffold L50 | 692 |
| Scaffold N50 (bp) | 1,388,941 |
| Scaffold N75 (bp) | 756,185 |
| Scaffold N90 (bp) | 354,436 |
| Contig sequence No. | 93,351 |
| Contig L50 | 12,505 |
| Contig N50 (bp) | 67,050 |
| Unique components No. | 14,028 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 79,323 |
| Ns gap sequence region length (bp) | 244,909,363 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 50838 | 614 | 727 | asse10157 | 6195 | 0 | 68531 |