- Scientific Name
- Solanum lycopersicum
- Common Names
- tomato; Lycopersicon esculentum, Lycopersicon esculentum var. esculentum, Solanum esculentum, Solanum lycopersicum var. humboldtii
- Bioproject
- PRJNA119
- Biosample
- SAMN02981290
- Accession No.
- GCA_000188115.2
- RefSeq Accession No.
- GCF_000188115.3
- RefSeq vs GenBank similarity
- different
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Solanaceae Genomics Project
- Released Date
- 2025-05-21
- NCBI Released Date
- 2014-10-16
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Download
- DNA GFF
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_000188115.5 | - | - | SL4.0 | Draft genome in scaffold level | 2025-02-28 | DNA |
| GCA_000188115.4 | GCF_000188115.5 | different | SL3.1 | Draft genome in scaffold level | 2018-04-18 | DNA RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
| GCA_000188115.3 | GCF_000188115.4 | different | SL3.0 | Draft genome in scaffold level | 2018-04-18 | DNA RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
| GCA_000188115.2 | GCF_000188115.3 | different | SL2.50 | Draft genome in scaffold level | 2014-10-16 | DNA GFF RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
| GCA_000188115.1 | GCF_000188115.2 | different | SL2.40 | Draft genome in scaffold level | 2011-02-08 | DNA RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
| GCA_000188115.1 | GCF_000188115.1 | different | SL2.40 | Draft genome in scaffold level | 2011-02-08 | DNA |
Statistics of Genome Assembly
| Genome size (bp) | 823,630,941 |
| Chromosomes, organellas and plasmids sequnece No. | 12 |
| Genome sequence No. | 3,144 |
| GC content | 34 |
| Scaffold sequence No. | 3,223 |
| Scaffold L50 | 17 |
| Scaffold N50 (bp) | 16,467,796 |
| Scaffold N75 (bp) | 7,023,442 |
| Scaffold N90 (bp) | 3,041,128 |
| Contig sequence No. | 26,879 |
| Contig L50 | 2,009 |
| Contig N50 (bp) | 86,939 |
| Unique components No. | 26,877 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 23,656 |
| Ns gap sequence region length (bp) | 85,994,505 |
| Gaps No. between scaffolds | 79 |