- Scientific Name
- Solanum lycopersicum
- Common Names
- tomato; Lycopersicon esculentum, Lycopersicon esculentum var. esculentum, Solanum esculentum, Solanum lycopersicum var. humboldtii
- Bioproject
- PRJNA119
- Biosample
- SAMN02981290
- Accession No.
- GCA_000188115.4
- RefSeq Accession No.
- GCF_000188115.5
- RefSeq vs GenBank similarity
- different
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Solanaceae Genomics Project
- Released Date
- 2024-10-02
- NCBI Released Date
- 2018-04-18
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Download
- DNA
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_000188115.5 | - | - | SL4.0 | Draft genome in scaffold level | 2025-02-28 | DNA |
| GCA_000188115.4 | GCF_000188115.5 | different | SL3.1 | Draft genome in scaffold level | 2018-04-18 | DNA RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
| GCA_000188115.3 | GCF_000188115.4 | different | SL3.0 | Draft genome in scaffold level | 2018-04-18 | DNA RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
| GCA_000188115.2 | GCF_000188115.3 | different | SL2.50 | Draft genome in scaffold level | 2014-10-16 | DNA GFF RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
| GCA_000188115.1 | GCF_000188115.2 | different | SL2.40 | Draft genome in scaffold level | 2011-02-08 | DNA RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
| GCA_000188115.1 | GCF_000188115.1 | different | SL2.40 | Draft genome in scaffold level | 2011-02-08 | DNA |
Statistics of Genome Assembly
| Genome size (bp) | 827,361,276 |
| Chromosomes, organellas and plasmids sequnece No. | 12 |
| Genome sequence No. | 3,064 |
| GC content | 34 |
| Scaffold sequence No. | 3,064 |
| Scaffold L50 | 6 |
| Scaffold N50 (bp) | 66,723,567 |
| Scaffold N75 (bp) | 65,633,393 |
| Scaffold N90 (bp) | 55,977,580 |
| Contig sequence No. | 22,524 |
| Contig L50 | 1,332 |
| Contig N50 (bp) | 133,084 |
| Unique components No. | 3,064 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 19,460 |
| Ns gap sequence region length (bp) | 81,317,872 |
| Gaps No. between scaffolds | 0 |
Statistics of Genome Assembly
| Genome size (bp) | 827,962,994 |
| Chromosomes, organellas and plasmids sequnece No. | 14 |
| Genome sequence No. | 3,066 |
| GC content | 34 |
| Scaffold sequence No. | 3,066 |
| Scaffold L50 | 6 |
| Scaffold N50 (bp) | 66,723,567 |
| Scaffold N75 (bp) | 65,633,393 |
| Scaffold N90 (bp) | 55,977,580 |
| Contig sequence No. | 22,526 |
| Contig L50 | 1,332 |
| Contig N50 (bp) | 133,429 |
| Unique components No. | 3,066 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 19,460 |
| Ns gap sequence region length (bp) | 81,317,872 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 25559 | 827 | 47 | asse3517 | 1260 | 9 | 31219 |