- Scientific Name
- Arabidopsis thaliana
- Common Names
- mouse-ear cress, thale-cress; thale cress; Arabis thaliana
- Bioproject
- PRJNA10719
- Biosample
- SAMN03081427
- Accession No.
- GCA_000001735.1
- RefSeq Accession No.
- GCF_000001735.3
- RefSeq vs GenBank similarity
- different
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- The Arabidopsis Information Resource (TAIR)
- Released Date
- 2025-05-21
- NCBI Released Date
- 2011-05-11
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Download
- DNA GFF RNA CDS Protein
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_000001735.2 | GCF_000001735.4 | identical | TAIR10.1 | Draft genome in scaffold level | 2018-03-15 | DNA GFF RNA CDS Protein RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
| GCA_000001735.1 | GCF_000001735.3 | different | TAIR10 | Draft genome in scaffold level | 2011-05-11 | DNA GFF RNA CDS Protein RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
Statistics of Genome Assembly
| Genome size (bp) | 119,146,348 |
| Chromosomes, organellas and plasmids sequnece No. | 5 |
| Genome sequence No. | 5 |
| Contig sequence No. | 100 |
| Contig N50 (bp) | 11,194,537 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 95 |
| Ns gap sequence region length (bp) | 185,644 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 27444 | 625 | 4 | 4982 | 4842 | 1 | 37898 |
Statistics of Genome Assembly
| Genome size (bp) | 119,667,750 |
| Chromosomes, organellas and plasmids sequnece No. | 7 |
| Genome sequence No. | 7 |
| Contig sequence No. | 102 |
| Contig N50 (bp) | 11,194,537 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 95 |
| Ns gap sequence region length (bp) | 185,644 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 27444 | 625 | 4 | asse4982 | 4843 | 0 | 37898 |