- Scientific Name
- Oryza glaberrima
- Common Names
- African rice;
- Bioproject
- PRJNA13765
- Biosample
- SAMN02981267
- Accession No.
- GCA_000147395.2
- RefSeq Accession No.
- -
- RefSeq vs GenBank similarity
- -
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- The Oryza Map Alignment Project (OMAP)
- Released Date
- 2025-05-21
- NCBI Released Date
- 2010-09-22
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Download
- DNA
- RefSeq Download
- -
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | NCBI Released Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_000147395.3 | GCF_000147395.1 | different | OglaRS2 | Draft genome in scaffold level | 2021-03-10 | DNA RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein |
| GCA_000147395.1 | - | - | Oryza_glaberrima_V1 | Draft genome in chromosome level | 2010-09-22 | DNA GFF |
| GCA_000147395.2 | - | - | Oryza_glaberrima_V1 | Draft genome in chromosome level | 2010-09-22 | DNA |
Statistics of Genome Assembly
| Genome size (bp) | 303,294,962 |
| Chromosomes, organellas and plasmids sequnece No. | 12 |
| Genome sequence No. | 25,599 |
| GC content | 43 |
| Scaffold sequence No. | 25,599 |
| Scaffold L50 | 3,204 |
| Scaffold N50 (bp) | 23,146 |
| Scaffold N75 (bp) | 10,674 |
| Scaffold N90 (bp) | 5,100 |
| Contig sequence No. | 25,892 |
| Contig L50 | 3,430 |
| Contig N50 (bp) | 22,955 |
| Unique components No. | 25,753 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 293 |
| Ns gap sequence region length (bp) | 29,600 |
| Gaps No. between scaffolds | 0 |