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  • Oryza glaberrima
  • OglaRS2
    • Scientific Name
    Oryza glaberrima
    Common Names
    African rice;
    Bioproject
    PRJNA13765
    Biosample
    SAMN02981267
    Accession No.
    GCA_000147395.3
    RefSeq Accession No.
    GCF_000147395.1
    RefSeq vs GenBank similarity
    different
    Source
    NCBI
    External Links
    NCBI
    Submitter Organization
    The Oryza Map Alignment Project (OMAP)
    Released Date
    2025-02-23
    NCBI Released Date
    2021-03-10
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Download
    DNA
    RefSeq Download
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    Publication(s)
    -
    Assembly Accession RefSeq Accession RefSeq vs GenBank similarity Assembly Name Assembly Level NCBI Released Date Download Files
    GCA_000147395.3 GCF_000147395.1 different OglaRS2 Draft genome in scaffold level 2021-03-10 DNA
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    GCA_000147395.1 - - Oryza_glaberrima_V1 Draft genome in chromosome level 2010-09-22 DNA GFF
    GCA_000147395.2 - - Oryza_glaberrima_V1 Draft genome in chromosome level 2010-09-22 DNA

    Statistics of Genome Assembly

    Genome size (bp) 347,321,046
    Chromosomes, organellas and plasmids sequnece No. 12
    Genome sequence No. 59
    GC content 43
    Scaffold sequence No. 72
    Scaffold L50 10
    Scaffold N50 (bp) 15,217,274
    Scaffold N75 (bp) 11,635,815
    Scaffold N90 (bp) 10,277,242
    Contig sequence No. 72
    Contig L50 10
    Contig N50 (bp) 15,217,274
    Unique components No. 72
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 0
    Ns gap sequence region length (bp) 1,300
    Gaps No. between scaffolds 13

    Statistics of Genome Assembly

    Genome size (bp) 347,453,675
    Chromosomes, organellas and plasmids sequnece No. 13
    Genome sequence No. 60
    GC content 43
    Scaffold sequence No. 73
    Scaffold L50 10
    Scaffold N50 (bp) 15,217,274
    Scaffold N75 (bp) 11,635,815
    Scaffold N90 (bp) 10,277,242
    Contig sequence No. 73
    Contig L50 10
    Contig N50 (bp) 15,217,274
    Unique components No. 73
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 0
    Ns gap sequence region length (bp) 1,300
    Gaps No. between scaffolds 13
    Annotation of Whole Genome Assembly
    asse
    Protein trna rrna ncrna Pseudogene Others Total
    Total 27018 599 13742249 2945 0 34185