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  • Brassica rapa
  • Brapa_1.0
    • Scientific Name
    Brassica rapa
    Common Names
    field mustard;
    Bioproject
    PRJNA59981
    Biosample
    SAMN02981293
    Accession No.
    GCA_000309985.1
    RefSeq Accession No.
    GCF_000309985.1
    RefSeq vs GenBank similarity
    different
    Source
    NCBI
    External Links
    NCBI
    Submitter Organization
    Brassica rapa genome sequencing project, BraGSP
    Released Date
    2025-05-21
    NCBI Released Date
    2012-11-07
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Download
    DNA GFF
    RefSeq Download
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    Publication(s)
    -
    Assembly Accession RefSeq Accession RefSeq vs GenBank similarity Assembly Name Assembly Level NCBI Released Date Download Files
    GCA_000309985.3 GCF_000309985.2 different CAAS_Brap_v3.01 Draft genome in scaffold level 2020-01-23 DNA
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    GCA_000309985.2 - - ASM30998v2 Draft genome in chromosome level 2017-12-11 DNA
    GCA_000309985.1 GCF_000309985.1 different Brapa_1.0 Draft genome in scaffold level 2012-11-07 DNA GFF
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein

    Statistics of Genome Assembly

    Genome size (bp) 283,975,909
    Chromosomes, organellas and plasmids sequnece No. 10
    Genome sequence No. 40,248
    GC content 35.5
    Scaffold sequence No. 40,431
    Scaffold L50 39
    Scaffold N50 (bp) 1,971,137
    Scaffold N75 (bp) 1,025,155
    Scaffold N90 (bp) 357,979
    Contig sequence No. 51,658
    Contig L50 1,661
    Contig N50 (bp) 46,137
    Unique components No. 51,658
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 11,227
    Ns gap sequence region length (bp) 10,904,295
    Gaps No. between scaffolds 183

    Statistics of Genome Assembly

    Genome size (bp) 284,129,391
    Chromosomes, organellas and plasmids sequnece No. 11
    Genome sequence No. 40,249
    GC content 35.5
    Scaffold sequence No. 40,432
    Scaffold L50 40
    Scaffold N50 (bp) 1,960,303
    Scaffold N75 (bp) 1,025,155
    Scaffold N90 (bp) 357,979
    Contig sequence No. 51,659
    Contig L50 1,660
    Contig N50 (bp) 46,175
    Unique components No. 51,659
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 11,227
    Ns gap sequence region length (bp) 10,904,295
    Gaps No. between scaffolds 183
    Annotation of Whole Genome Assembly
    asse
    Protein trna rrna ncrna Pseudogene Others Total
    Total 40583 1047 05477 2006 0 49113