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  • Brassica rapa
  • CAAS_Brap_v3.01
    • Scientific Name
    Brassica rapa
    Common Names
    field mustard;
    Bioproject
    PRJNA59981
    Biosample
    SAMN02981293
    Accession No.
    GCA_000309985.3
    RefSeq Accession No.
    GCF_000309985.2
    RefSeq vs GenBank similarity
    different
    Source
    NCBI
    External Links
    NCBI
    Submitter Organization
    Brassica rapa genome sequencing project, BraGSP
    Released Date
    2025-02-23
    NCBI Released Date
    2020-01-23
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Download
    DNA
    RefSeq Download
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    Publication(s)
    -
    Assembly Accession RefSeq Accession RefSeq vs GenBank similarity Assembly Name Assembly Level NCBI Released Date Download Files
    GCA_000309985.3 GCF_000309985.2 different CAAS_Brap_v3.01 Draft genome in scaffold level 2020-01-23 DNA
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    GCA_000309985.2 - - ASM30998v2 Draft genome in chromosome level 2017-12-11 DNA
    GCA_000309985.1 GCF_000309985.1 different Brapa_1.0 Draft genome in scaffold level 2012-11-07 DNA GFF
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein

    Statistics of Genome Assembly

    Genome size (bp) 352,829,610
    Chromosomes, organellas and plasmids sequnece No. 10
    Genome sequence No. 1,099
    GC content 37
    Scaffold sequence No. 1,099
    Scaffold L50 6
    Scaffold N50 (bp) 28,928,902
    Scaffold N75 (bp) 21,928,416
    Scaffold N90 (bp) 74,260
    Contig sequence No. 1,507
    Contig L50 71
    Contig N50 (bp) 1,386,548
    Unique components No. 1,099
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 408
    Ns gap sequence region length (bp) 2,139,352
    Gaps No. between scaffolds 0

    Statistics of Genome Assembly

    Genome size (bp) 352,983,092
    Chromosomes, organellas and plasmids sequnece No. 11
    Genome sequence No. 1,100
    GC content 37
    Scaffold sequence No. 1,100
    Scaffold L50 6
    Scaffold N50 (bp) 28,928,902
    Scaffold N75 (bp) 21,928,416
    Scaffold N90 (bp) 74,260
    Contig sequence No. 1,508
    Contig L50 71
    Contig N50 (bp) 1,386,548
    Unique components No. 1,100
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 408
    Ns gap sequence region length (bp) 2,139,352
    Gaps No. between scaffolds 0
    Annotation of Whole Genome Assembly
    asse
    Protein trna rrna ncrna Pseudogene Others Total
    Total 41403 1100 13825835 1869 0 51589