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  • Juglans regia
  • wgs.5d
    • Scientific Name
    Juglans regia
    Common Names
    English walnut;
    Bioproject
    PRJNA291087
    Biosample
    SAMN03704235
    Accession No.
    GCA_001411555.1
    RefSeq Accession No.
    GCF_001411555.1
    RefSeq vs GenBank similarity
    different
    Source
    NCBI
    External Links
    NCBI
    Submitter Organization
    Johns Hopkins University
    Released Date
    2025-05-21
    NCBI Released Date
    2015-10-22
    Assembly Level
    Draft genome in scaffold level
    Genome Representation
    Full Genome
    Download
    DNA
    RefSeq Download
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    Publication(s)
    -
    Assembly Accession RefSeq Accession RefSeq vs GenBank similarity Assembly Name Assembly Level NCBI Released Date Download Files
    GCA_001411555.2 GCF_001411555.2 different Walnut 2.0 Draft genome in scaffold level 2020-07-08 DNA GFF RNA CDS Protein
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    GCA_001411555.1 GCF_001411555.1 different wgs.5d Draft genome in chromosome level 2015-10-22 DNA
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein

    Statistics of Genome Assembly

    Genome size (bp) 700,624,454
    Chromosomes, organellas and plasmids sequnece No. 2
    Genome sequence No. 105,811
    GC content 36
    Scaffold sequence No. 105,811
    Scaffold L50 445
    Scaffold N50 (bp) 250,485
    Scaffold N75 (bp) 44,762
    Scaffold N90 (bp) 5,908
    Contig sequence No. 139,906
    Contig L50 4,054
    Contig N50 (bp) 38,743
    Unique components No. 105,811
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 34,095
    Ns gap sequence region length (bp) 24,869,066
    Gaps No. between scaffolds 0

    Statistics of Genome Assembly

    Genome size (bp) 699,672,627
    Chromosomes, organellas and plasmids sequnece No. 0
    Genome sequence No. 105,803
    GC content 36
    Scaffold sequence No. 105,803
    Scaffold L50 443
    Scaffold N50 (bp) 250,522
    Scaffold N75 (bp) 44,589
    Scaffold N90 (bp) 5,892
    Contig sequence No. 139,898
    Contig L50 4,059
    Contig N50 (bp) 38,661
    Unique components No. 105,803
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 34,095
    Ns gap sequence region length (bp) 24,869,066
    Gaps No. between scaffolds 0
    Annotation of Whole Genome Assembly
    asse
    Protein trna rrna ncrna Pseudogene Others Total
    Total 36861 572 03755 2135 0 43323