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  • Juglans regia
  • Walnut 2.0
    • Scientific Name
    Juglans regia
    Common Names
    English walnut;
    Bioproject
    PRJNA291087
    Biosample
    SAMN03704235
    Accession No.
    GCA_001411555.2
    RefSeq Accession No.
    GCF_001411555.2
    RefSeq vs GenBank similarity
    different
    Source
    NCBI
    External Links
    NCBI
    Submitter Organization
    Johns Hopkins University
    Released Date
    2024-10-01
    NCBI Released Date
    2020-07-08
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Download
    DNA GFF RNA CDS Protein
    RefSeq Download
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    Publication(s)
    -
    Assembly Accession RefSeq Accession RefSeq vs GenBank similarity Assembly Name Assembly Level NCBI Released Date Download Files
    GCA_001411555.2 GCF_001411555.2 different Walnut 2.0 Draft genome in scaffold level 2020-07-08 DNA GFF RNA CDS Protein
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    GCA_001411555.1 GCF_001411555.1 different wgs.5d Draft genome in chromosome level 2015-10-22 DNA
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein

    Statistics of Genome Assembly

    Genome size (bp) 573,950,330
    Chromosomes, organellas and plasmids sequnece No. 18
    Genome sequence No. 24,765
    GC content 36
    Scaffold sequence No. 24,765
    Scaffold L50 7
    Scaffold N50 (bp) 37,114,715
    Scaffold N75 (bp) 28,841,373
    Scaffold N90 (bp) 22,562,875
    Contig sequence No. 25,816
    Contig L50 147
    Contig N50 (bp) 1,066,305
    Unique components No. 24,765
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 1,051
    Ns gap sequence region length (bp) 603,869
    Gaps No. between scaffolds 0
    Annotation of Whole Genome Assembly
    Protein trna rrna ncrna Pseudogene Others Total
    Total 37259 6 0 0 0 0 37265

    Statistics of Genome Assembly

    Genome size (bp) 572,946,670
    Chromosomes, organellas and plasmids sequnece No. 17
    Genome sequence No. 24,757
    GC content 36
    Scaffold sequence No. 24,757
    Scaffold L50 7
    Scaffold N50 (bp) 37,114,715
    Scaffold N75 (bp) 28,841,373
    Scaffold N90 (bp) 22,562,875
    Contig sequence No. 25,808
    Contig L50 146
    Contig N50 (bp) 1,072,962
    Unique components No. 24,757
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 1,051
    Ns gap sequence region length (bp) 603,869
    Gaps No. between scaffolds 0
    Annotation of Whole Genome Assembly
    asse
    Protein trna rrna ncrna Pseudogene Others Total
    Total 30709 491 21212318 2357 0 37996